/**
 * \file  debugging.h
 * \brief Definition of Debugging class.
 *
 * LAV: Lib Anti Virals
 * <http://lav.googlecode.com/>
 * Copyright (C) 2013  Boretto Martin, Lenarduzzi Federico, 
 *                     Alberione Fernando, Ocampo Emanuel FuDePAN
 *
 * This file is part of the LAV project.
 *
 * Contents:       Header file for LAV providing class Antiviral implementation.
 *
 * System:         LAV
 * Language:       C++
 *
 * Author:         Boretto Martin
 * E-Mail:         martinboretto@gmail.com
 *
 * Author:         Lenarduzzi Federico
 * E-Mail:         federicolenarduzzi@gmail.com
 * 
 * Author:         Alberione Fernando
 * E-Mail:         falberione037@gmail.com
 *
 * Author:         Ocampo Emanuel
 * E-Mail:         eocampo86@gmail.com
 *
 * LAV is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * LAV is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with LAV.  If not, see <http://www.gnu.org/licenses/>.
 *
 */

#ifndef DEBUGGING_H
#define DEBUGGING_H


#include <mili/mili.h>
#include "lav/antiviral_set.h"

using namespace std;

namespace lav
{

class Debugging
{

public:

	/**
	* This method prints the antivirals list
	*/
	void print_antivirals(const AntiviralSet& antivirals) const;


	/**
	* This method prints antiviral's combinations
	* @param arvs_info Represents all information which will be print
	* @param is_arvs_x True if print is about cartesian product applied, false otherwise
	*/
	void print_all_combinations(const ResisBasedAntiviral::CombinationContainer& arvs_info, bool is_arvs_x) const;


	/**
	* This method prints antiviral's expansions
	* @param arvs_expansion Represents all information which will be print
	* @param is_arvs_x True if print is about cartesian product applied, false otherwise
	*/
	void print_expansions(const ARVExpansionContainer& arvs_expansion, bool is_arvs_x) const;


	/**
	* This method prints all combinations generated with each calculated distance
	* @param combinations_with_distances Contains the information that will be print
	*/
    void print_combinations_with_genetic_distances(const CombinationDistanceContainer& combinations_with_distances, 
	                    bool is_ranker) const;


	/**
	* This method prints all mutants generated
	* @param mutants_list Contains the information that will be print
	*/
	void print_all_mutants(const MutantContainer& mutants_list) const;


		/**
	* This method prints antiviral's combinations with cartesian product applied
	* @param arvs_info_x Represents all information that will be print
	*/
	void print_combinations_with_x(const ResisBasedAntiviral::CombinationContainer& arvs_info_x) const;


	/**
	* This method prints antiviral's combinations without cartesian product applied
	* @param arvs_info Represents all information that will be print
	*/
	void print_only_combinations(const ResisBasedAntiviral::CombinationContainer& arvs_info) const;
};

}
#endif